Arc, E., Sechet, J., Corbineau, F., Rajjou, L., and Marion-Poll, A. (2013). ABA crosstalk with ethylene and nitric oxide in seed dormancy and germination. Front. Plant Sci. 4, 63.
Batista, R.A., Figueiredo, D.D., Santos-Gonzalez, J., and Kohler, C. (2019). Auxin regulates endosperm cellularization in Arabidopsis. Genes Dev. 33, 466-476.
Bentsink, L., and Koornneef, M. (2008). Seed dormancy and germination. Arabidopsis Book 6, e0119.
Carrera, E., Holman, T., Medhurst, A., Dietrich, D., Footitt, S., Theodoulou, F.L., and Holdsworth, M.J. (2008). Seed after-ripening is a discrete developmental pathway associated with speci?c gene networks in Arabidopsis. Plant J. 53, 214-224.
Chang, G.X., Wang, C.T., Kong, X.X., Chen, Q., Yang, Y.P., and Hu, X.Y. (2018). AFP2 as the novel regulator breaks high-temperature-induced seeds secondary dormancy through ABI5 and SOM in Arabidopsis thaliana. Biochem. Biophys. Res. Commun. 501, 232-238.
Che, R., Tong, H., Shi, B., Liu, Y., Fang, S., Liu, D., Xiao, Y., Hu, B., Liu, L., Wang, H., et al. (2015). Control of grain size and rice yield by GL2-mediated brassinosteroid responses. Nat. Plants 2, 15195.
Cho, J.N., Ryu, J.Y., Jeong, Y.M., Park, J., Song, J.J., Amasino, R.M., Noh, B., and Noh, Y.S. (2012). Control of seed germination by light-induced histone arginine demethylation activity. Dev. Cell 22, 736-748.
Day, R.C., Herridge, R.P., Ambrose, B.A., and Macknight, R.C. (2008). Transcriptome analysis of proliferating Arabidopsis endosperm reveals biological implications for the control of syncytial division, cytokinin signaling, and gene expression regulation. Plant Physiol. 148, 1964-1984.
Doll, N.M., Royek, S., Fujita, S., Okuda, S., Chamot, S., Stintzi, A., Widiez, T., Hothorn, M., Schaller, A., Geldner, N., et al. (2020). A two-way molecular dialogue between embryo and endosperm is required for seed development. Science 367, 431-435.
Dong, H., Dumenil, J., Lu, F.H., Na, L., Vanhaeren, H., Naumann, C., Klecker, M., Prior, R., Smith, C., McKenzie, N., et al. (2017). Ubiquitylation activates a peptidase that promotes cleavage and destabilization of its activating E3 ligases and diverse growth regulatoryproteins to limit cell proliferation in Arabidopsis. Genes Dev. 31, 197-208.
Du, L., Li, N., Chen, L., Xu, Y., Li, Y., Zhang, Y., and Li, C. (2014). The ubiquitin receptor DA1 regulates seed and organ size by modulating the stability of the ubiquitin-speci?c protease UBP15/SOD2 in Arabidopsis. Plant Cell 26, 665-677.
Duan, P., Ni, S., Wang, J., Zhang, B., Xu, R., Wang, Y., Chen, H., Zhu, X., and Li, Y. (2015). Regulation of OsGRF4 by OsmiR396 controls grain size and yield in rice. Nat. Plants, 15203.
Fan, C., Xing, Y., Mao, H., Lu, T., Han, B., Xu, C., Li, X., and Zhang, Q. (2006). GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane protein. Theor. Appl. Genet. 112, 1164-1171.
Finkelstein, R., Reeves, W., Ariizumi, T., and Steber, C. (2008). Molecular aspects of seed dormancy. Annu. Rev. Plant Biol. 59, 387-415.
Gazzarrini, S., and Tsai, A.Y. (2015). Hormone cross-talk during seed germination. Essays Biochem. 58, 151-164.
Guo, G., Liu, X., Sun, F., Cao, J., Huo, N., Wuda, B., Xin, M., Hu, Z., Du, J., Xia, R., et al. (2018b). Wheat miR9678 affects seed germination by generating phased siRNAs and modulating abscisic acid/gibberellin signaling. Plant Cell 30, 796-814.
Guo, T., Chen, K., Dong, N.Q., Shi, C.L., Ye, W.W., Gao, J.P., Shan, J.X., and Lin, H.X. (2018a).
GRAIN SIZE AND NUMBER1 negatively regulates the OsMKKK10-OsMKK4-OsMPK6 cascade to coordinate the trade-off between grain number per panicle and grain size in rice. Plant Cell 30, 871-888.
Holdsworth, M.J., Bentsink, L., and Soppe, W.J.J. (2008). Molecular networks regulating Arabidopsis seed maturation, after-ripening, dormancy and germination. New Phytol. 179, 33-54.
Hu, Y., Han, X., Yang, M., Zhang, M., Pan, J., and Yu, D. (2019). The transcription factor INDUCER OF CBF EXPRESSION1 interacts with ABSCISIC ACID INSENSITIVE5 and
DELLA proteins to ?ne-tune abscisic acid signaling during seed germination in Arabidopsis. Plant Cell 31, 1520-1538.
Jiang, Z., Xu, G., Jing, Y., Tang, W., and Lin, R. (2016). Phytochrome B and REVEILLE1/2-
mediated signalling controls seed dormancy and germination in Arabidopsis. Nat. Commun.7, 12377.
Jiao, Y., Wang, Y., Xue, D., Wang, J., Yan, M., Liu, G., Dong, G., Zeng, D., Lu, Z., Zhu, X., et al. (2010). Regulation of OsSPL14 by OsmiR156 de?nes ideal plant architecture in rice. Nat. Genet. 42, 541-544.
Kang, J., Yim, S., Choi, H., Kim, A., Lee, K.P., Lopez-Molina, L., Martinoia, E., and Lee, Y. (2015). Abscisic acid transporters cooperate to control seed germination. Nat. Commun. 6, 8113.
Li, N., and Li, Y. (2016). Signaling pathways of seed size control in plants. Curr. Opin. Plant Biol. 33, 23-32.
Li, N., Xu, R., and Li, Y. (2019). Molecular networks of seed size control in plants. Annu. Rev.
Plant Biol. 70, 435-463.
Li, Y., Zheng, L., Corke, F., Smith, C., and Bevan, M.W. (2008). Control of ?nal seed and organ
size by the DA1 gene family in Arabidopsis thaliana. Genes Dev 22, 1331-1336.
Liu, X., Hu, P., Huang, M., Tang, Y., Li, Y., Li, L., and Hou, X. (2016). The NF-YC-RGL2
module integrates GA and ABA signalling to regulate seed germination in Arabidopsis. Nat. Commun. 7, 12768.
Ma, W., Guan, X., Li, J., Pan, R., Wang, L., Liu, F., Ma, H., Zhu, S., Hu, J., Ruan, Y.L., et al. (2019). Mitochondrial small heat shock protein mediates seed germination via thermal sensing. Proc. Natl. Acad. Sci. USA 116, 4716-4721.
Pen?eld, S., Josse, E.M., Kannangara, R., Gilday, A.D., Halliday, K.J., and Graham, I.A. (2005). Cold and light control seed germination through the bHLH transcription factor SPATULA. Curr. Biol. 15, 1998-2006.
Shi, H., Wang, X., Mo, X., Tang, C., Zhong, S., and Deng, X.W. (2015). Arabidopsis DET1 degrades HFR1 but stabilizes PIF1 to precisely regulate seed germination. Proc. Natl. Acad. Sci. USA 112, 3817-3822.
Si, L., Chen, J., Huang, X., Gong, H., Luo, J., Hou, Q., Zhou, T., Lu, T., Zhu, J., Shangguan, Y., et al. (2016). OsSPL13 controls grain size in cultivated rice. Nat. Genet. 48, 447-456.
Song, X.J., Huang, W., Shi, M., Zhu, M.Z., and Lin, H.X. (2007). A QTL for rice grain width and weight encodes a previously unknown RING-type E3 ubiquitin ligase. Nat. Genet. 39,623-630.
Sun, S., Wang, L., Mao, H., Shao, L., Li, X., Xiao, J., Ouyang, Y., and Zhang, Q. (2018). A G-protein pathway determines grain size in rice. Nat. Commun. 9, 851.
Topham, A.T., Taylor, R.E., Yan, D., Nambara, E., Johnston, I.G., and Bassel, G.W. (2017). Temperature variability is integrated by a spatially embedded decision-making center to break dormancy in Arabidopsis seeds. Proc. Natl. Acad. Sci. USA 114, 6629-6634.
Vaistij, F.E., Barros-Galvao, T., Cole, A.F., Gilday, A.D., He, Z., Li, Y., Harvey, D., Larson, T.R., and Graham, I.A. (2018). MOTHER-OF-FT-AND-TFL1 represses seed germination under far-red light by modulating phytohormone responses in Arabidopsis thaliana. Proc. Natl. Acad. Sci. USA 115, 8442-8447.
Wang, J.L., Tang, M.Q., Chen, S., Zheng, X.F., Mo, H.X., Li, S.J., Wang, Z., Zhu, K.M., Ding,
L.N., Liu, S.Y., et al. (2017). Down-regulation of BnDA1, whose gene locus is associated with the seeds weight, improves the seeds weight and organ size in Brassica napus. Plant Biotechnol. J. 15, 1024-1033.
Wang, S., Li, S., Liu, Q., Wu, K., Zhang, J., Wang, S., Wang, Y., Chen, X., Zhang, Y., Gao, C., et al. (2015a). The OsSPL16-GW7 regulatory module determines grain shape and simultaneously improves rice yield and grain quality. Nat. Genet. 47, 949-954.
Wang, S., Wu, K., Yuan, Q., Liu, X., Liu, Z., Lin, X., Zeng, R., Zhu, H., Dong, G., Qian, Q., et al. (2012). Control of grain size, shape and quality by OsSPL16 in rice. Nat. Genet. 44, 950-954.
Wang, Y., Xiong, G., Hu, J., Jiang, L., Yu, H., Xu, J., Fang, Y., Zeng, L., Xu, E., Xu, J., et al. (2015b). Copy number variation at the GL7 locus contributes to grain size diversity in rice. Nat. Genet. 47, 944-948.
Wang, Z., Chen, F., Li, X., Cao, H., Ding, M., Zhang, C., Zuo, J., Xu, C., Xu, J., Deng, X., et al. (2016). Arabidopsis seed germination speed is controlled by SNL histone deacetylase- binding factor-mediated regulation of AUX1. Nat. Commun. 7, 13412.
Wu, J.J., Peng, X.B., Li, W.W., He, R., Xin, H.P., and Sun, M.X. (2012). Mitochondrial GCD1 dysfunction reveals reciprocal cell-to-cell signaling during the maturation of Arabidopsis female gametes. Dev. Cell 23, 1043-1058.
Xia, T., Li, N., Dumenil, J., Li, J., Kamenski, A., Bevan, M.W., Gao, F., and Li, Y. (2013). The
ubiquitin receptor DA1 interacts with the E3 ubiquitin ligase DA2 to regulate seed and organsize in Arabidopsis. Plant Cell 25, 3347-3359.
Xie, G., Li, Z., Ran, Q., Wang, H., and Zhang, J. (2017). Over-expression of mutated ZmDA1 or ZmDAR1 gene improves maize kernel yield by enhancing starch synthesis. Plant Biotechnol. J. 16, 234-244.
Xu, R., Duan, P., Yu, H., Zhou, Z., Zhang, B., Wang, R., Li, J., Zhang, G., Zhuang, S., Lyu, J., et al. (2018a). Control of grain size and weight by the OsMKKK10-OsMKK4-OsMAPK6 signaling pathway in rice. Mol. Plant 11, 860-873.
Xu, R., Yu, H., Wang, J., Duan, P., Zhang, B., Li, J., Li, Y., Xu, J., Lyu, J., Li, N., et al. (2018b).
A mitogen-activated protein kinase phosphatase influences grain size and weight in rice. Plant J. 95, 937-946.
Yamauchi, Y., Ogawa, M., Kuwahara, A., Hanada, A., Kamiya, Y., and Yamaguchi, S. (2004). Activation of gibberellin biosynthesis and response pathways by low temperature during imbibition of Arabidopsis thaliana seeds. Plant Cell 16, 367-378.
Yan, A., and Chen, Z. (2017). The pivotal role of abscisic acid signaling during transition from seed maturation to germination. Plant Cell Rep. 36, 689-703.
Yin, L.L., and Xue, H.W. (2012). The MADS29 transcription factor regulates the degradation of the nucellus and the nucellar projection during rice seed development. Plant Cell 24, 1049- 1065.
Zhang, Y., Xiong, Y., Liu, R., Xue, H.W., and Yang, Z. (2019). The Rho-family GTPase OsRac1 controls rice grain size and yield by regulating cell division. Proc. Natl. Acad. Sci. USA 116, 16121-16126.
Zheng, X., Li, Q., Li, C., An, D., Xiao, Q., Wang, W., and Wu, Y. (2019). Intra-kernel reallocation of proteins in maize depends on VP1-mediated scutellum development and nutrient assimilation. Plant Cell 31, 2613-2635.
Zuo, J., and Li, J. (2014). Molecular genetic dissection of quantitative trait loci regulating rice grain size. Annu. Rev. Genet. 48, 99-118.