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中国学科发展战略·RNA研究中的重大科学问题

中国学科发展战略·RNA研究中的重大科学问题

细胞中存在各种各样的RNA分子,按照其是否携带编码蛋白质的信息来划分,可以分为信使RNA(message RNA,mRNA,即编码蛋白质的RNA)和非编码RNA(nonproteincoding RNA,ncRNA,即不编码蛋白质的RNA)两种。mRNA是携带基因组的遗传信息并指导蛋白质合成的一类RNA;而非编码RNA是相对于mRNA来说的,能够转录但不产生功能蛋白质产物的另一类RNA。非编码RNA与基因的表达和调控是当前生命科学最活跃的前沿研究之一。20年来, 一大批非编码RNA的发现及其功能的阐明,揭示了非编码RNA基因(简称非编码基因)在遗传信息表达和调控中的重要作用。非编码基因所具有的从调控到生物催化活力的结构与功能多样性,不仅大大开阔和革新了人们对许多生物学基本概念和基本问题(如生命起源方式和分子生物学中心法则)的认识,而且展示了RNA技术在生命科学、农学和医学中广阔的应用前景。
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中国科学院

根据《中国科学院学部“十二五”工作规划纲要》中关于组织开展学科发展战略研究的要求,2012年12月8日,中国科学院生物学与医学学部常务委员会会议批准开展关于RNA研究的战略研究项目,并于2013年1月启动。2013年6月,中国科学院学部与国家自然科学基金委员会联合开展的“RNA研究中的若干重大科学问题”项目启动。

项目启动后,按照国家自然科学基金委员会与中国科学院学科发展战略研究项目的要求,项目组由施蕴渝、陈润生、王恩多和屈良鹄领导,召开两次小范围、高层次的RNA研究战略研讨会,规模45~50人。会上,文献情报专家提供RNA研究情报资料,还两次发放美国加利福尼亚大学圣迭戈分校付向东教授撰写的关于RNA研究的评述文章。项目组汇聚了国内RNA 研究领域的一批优秀科学家,特别是一批年轻的科学家,瞄准国际学术前沿,凝聚科学问题,交流新的学术思想、学术成果、新技术和新方法。通过研讨会,项目组凝聚了国内最优秀的 RNA研究领域的学术研究队伍,召开的“RNA研究的战略研讨会”和“学术讨论会”已形成品牌。

在此基础上,屈良鹄主要负责并开始撰写《中国学科发展战略 RNA研究中的重大科学问题》,内容包括:RNA研究的科学意义与战略价值;RNA研究的发展规律与研究特点;RNA研究的发展现状与发展态势。在学术研讨的基础上,项目组凝练学科发展的前沿方向,分别由在RNA研究前沿研究领域从事一线工作的优秀科学家撰写了RNA研究的发展思路与发展方向,内容包括RNA信息学,RNA生成、加工和降解,RNA生理与遗传,RNA结构生物学,非编码RNA与医学,非编码RNA与农学,非编码RNA研究中的新方法和新技术等七个方向。每个方向按照概述、关键科学问题、发展思路、前沿方向及研究内容、发展目标和我国在该领域的优势加以撰写。具体编写分工如下
以姓氏拼音为序。*标注的为该部分主要执笔人。:①RNA信息学:陈润生、鲁志、屈良鹄、杨建华*、郑凌伶;②RNA生成、加工和降解:陈玲玲、程红、刘默芳、倪挺、戚益军、吴立刚*、徐永镇、杨运桂;③RNA生理与遗传:曹晓风、陈玲玲、 光寿红、刘默芳*、单革、汪阳明、王恩多;④RNA结构生物学:麻锦彪、王艳丽、叶克穷*;⑤非编码RNA与医学:宋尔卫、吴缅、庄诗美*;⑥非编码RNA与农学:曹晓风、陈月琴、陈晓亚、何新建、戚益军*、王佳伟;⑦非编码RNA研究中的新方法和新技术:陈匡时、方显杨、刘晓*、王宏伟、王江云、伊成器、张强锋、郑晓飞。此外,文献情报专家熊燕和阮梅花为本书提供了文献情报支撑服务。

人类基因组中编码蛋白质的序列只占2%,而占基因组98%的是不编码蛋白质的序列(即非编码区域),但人类基因组中大约80%的序列是可以被转录的。同时,大量疾病相关的突变发生在非编码区域上,并构成了由蛋白质、RNA、DNA和小分子组成的复杂的调控网络。此外,物种间最主要的差别也存在于这些非编码区域上。因此,我们认为非编码RNA是生命科学新的研究前沿,蕴含着生命活动的基本规律。对非编码RNA的研究充分体现了科学研究的前瞻性、基础性和重要性的特点,其研究水平将影响未来生命科学,包括医学和农学的发展。我国的非编码RNA研究起步时间与国际同行差距不大,近十年来已取得一批具有重要国际影响的原始创新成果,是生命科学有望取得国际领先地位的重要领域,是一个有可能取得原创突破的战略方向。因此,在本书资助机制与政策建议部分中,项目组提出:鉴于《国家中长期科学和技术发展规划纲要(2006—2020年)》中“非编码核糖核酸的表达调控与功能”已作为科学前沿被列入主要研究方向,建议中国科学院学部与国家自然科学基金委员会在编制国家“十三五”科学发展规划时,能充分考虑非编码RNA研究的重要意义;同时建议科技部在“国家重点研发计划”中予以考虑。

《中国学科发展战略 RNA研究中的重大科学问题》初稿于2013年秋完成。2014年秋学术会议传达了中国科学院学部工作局对“中国学科发展战略”项目研究成果的出版要求,要求各专题组在以往工作报告的基础上做出修订。2015年3月完成第二稿。 2016年2月完成第三稿 。2016年2月20~21日在广州召开的会议上进行了认真讨论,按照国家自然科学基金委员会中国科学院“学科发展战略研究”工作联合领导小组的要求进一步修改了第三稿,形成第四稿。2016年5月,书稿由中国科学院学部与国家自然科学基金委员会组织通讯评审通过,进入正式出版流程。

由于认识局限,书中难免存在缺陷和不足,敬请读者批评指正。

施蕴渝
2016年9月

总序 ……………………………………………………………………………  i
前言 ……………………………………………………………………………  v
摘要 …………………………………………………………………………… i x
犃犫狊狋狉犪犮狋 ……………………………………………………………………  xxiii
第一章 犚犖犃研究的科学意义与战略价值 ………………………… 1
第二章 犚犖犃研究的发展规律与研究特点 ………………………… 5
第三章 犚犖犃研究的发展现状与发展态势 ………………………… 11
   第一节 国际非编码RNA研究的规划和布局……………………… 11
   第二节 我国非编码RNA研究的规划和布局……………………… 12
   第三节 国内外研究成果计量分析 ………………………………… 15
   一、成果所属国家分析 ………………………………………… 16
   二、成果所属机构分析 ………………………………………… 18
   三、资助机构分析 ……………………………………………… 19
   四、高被引论文分析 …………………………………………… 20
   第四节 我国论文发表情况 ………………………………………… 23
   第五节 总结 ………………………………………………………… 27
第四章 犚犖犃研究的发展思路与发展方向 ………………………… 28
   第一节 RNA信息学 ………………………………………………… 29
   一、概述 ………………………………………………………… 29
   二、关键科学问题 ……………………………………………… 32
   三、发展思路 …………………………………………………… 32
   四、前沿方向及研究内容 ……………………………………… 32
   五、发展目标 …………………………………………………… 35
   六、我们的优势 ………………………………………………… 35
 第二节 RNA生成、加工和降解 …………………………………… 38
   一、概述 ………………………………………………………… 38
   二、关键科学问题 ……………………………………………… 42
   三、发展思路 …………………………………………………… 43
   四、前沿方向及研究内容 ……………………………………… 43
   五、发展目标 …………………………………………………… 55
   六、我们的优势 ………………………………………………… 55
 第三节 RNA生理与遗传 …………………………………………… 58
   一、概述 ………………………………………………………… 58
   二、关键科学问题 ……………………………………………… 65
   三、发展思路 …………………………………………………… 65
   四、前沿方向及研究内容 ……………………………………… 66
   五、发展目标 …………………………………………………… 67
   六、我们的优势 ………………………………………………… 67
 第四节 RNA结构生物学 …………………………………………… 69
   一、概述 ………………………………………………………… 69
   二、该领域的关键科学问题 …………………………………… 73
   三、发展思路 …………………………………………………… 74
   四、前沿方向及研究内容 ……………………………………… 75
   五、发展目标 …………………………………………………… 77
   六、我们的优势 ………………………………………………… 77
 第五节 非编码RNA与医学………………………………………… 78
   一、概述 ………………………………………………………… 78
   二、关键科学问题 ……………………………………………… 81
   三、发展思路 …………………………………………………… 81
   四、前沿方向及研究内容 ……………………………………… 82
   五、发展目标 …………………………………………………… 84
   六、我们的优势 ………………………………………………… 84
 第六节 非编码RNA与农学………………………………………… 87
   一、研究背景 …………………………………………………… 87
   二、关键科学问题 ……………………………………………… 90
   三、发展思路 …………………………………………………… 91
   四、前沿方向及研究内容 ……………………………………… 91
   五、发展目标 …………………………………………………… 93
   六、我们的优势 ………………………………………………… 93
 第七节 非编码RNA研究中的新方法和新技术…………………… 95
   一、概述 ………………………………………………………… 95
   二、关键科学问题 ……………………………………………… 103
   三、发展思路 …………………………………………………… 104
   四、前沿方向及研究内容 ……………………………………… 105
   五、发展目标 …………………………………………………… 108
   六、我们的优势 ………………………………………………… 108
第五章 资助机制与政策建议 ……………………………………… 110
参考文献…………………………………………………………………… 111
附录 缩略词 …………………………………………………………… 141
关键词索引………………………………………………………………… 143

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